PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00570.1.p
Common NameEUGRSUZ_E00570, LOC104443791
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 133aa    MW: 14670.7 Da    PI: 9.2214
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00570.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC104.56.9e-33221041798
             NF-YC  17 knhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                       ++h+lPlarikki+k +d+ v+mis eaP+++s+a elf+ elt +sw+ a e krrtl++ d+ +a++ td+fdflvd v  
  Eucgr.E00570.1.p  22 QQHSLPLARIKKIMKkSDDGVEMISGEAPIVFSRAIELFVEELTRKSWMLAAEDKRRTLQRDDVVSAIQGTDVFDFLVDLVCV 104
                       79************735778***********************************************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.41E-261998IPR009072Histone-fold
PfamPF008082.1E-192589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.1E-2926102IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MRQAGIYSRI SSSSSSGRRG SQQHSLPLAR IKKIMKKSDD GVEMISGEAP IVFSRAIELF  60
VEELTRKSWM LAAEDKRRTL QRDDVVSAIQ GTDVFDFLVD LVCVPDQQNE RKESPVGSET  120
ETVGSKRTKV GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-27710223117HapE
4g92_C3e-27710223117HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00570.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055617.12e-92PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ9ZVL35e-31NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLA0A059C0X93e-92A0A059C0X9_EUCGR; Uncharacterized protein
STRINGPOPTR_0001s09100.18e-41(Populus trichocarpa)
STRINGGLYMA12G34510.11e-40(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.34e-24nuclear factor Y, subunit C3